Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
CESC rs7101220 chr10:88208767 C/T 1.18E-14 298 3.33 24.9 21.17 KM Plot
CESC rs7144335 chr14:90732280 A/G 3.17E-5 293 20.63 21.3 24.08 KM Plot
CESC rs71449673 chr2:3473771 T/C 1.6E-8 290 20.73 32.87 1.43 KM Plot
CESC rs7145398 chr14:90732150 T/C 2.29E-5 294 20.7 21.3 24.08 KM Plot
CESC rs71513977 chr1:112326702 G/A 3.7E-14 291 21.27 20.23 3.33 KM Plot
CESC rs71574746 chr7:123145576 C/T 4.7E-13 295 23.42 18.33 3.97 KM Plot
CESC rs71601675 chr4:57935445 G/A 2.14E-8 296 21.2 30.18 11.6 KM Plot
CESC rs7165421 chr15:99225832 A/G 4.81E-5 296 21.23 21.97 11.6 KM Plot
CESC rs7165780 chr15:67150184 T/C 8.84E-5 295 21.2 27.67 8.4 KM Plot
CESC rs71673435 chr1:112324271 A/G 0 292 21.4 20.23 4.07 KM Plot
CESC rs7168266 chr15:99222503 A/G 4.68E-5 295 21.2 24.9 11.6 KM Plot
CESC rs7173928 chr15:99233945 C/T 4.36E-5 296 21.2 23.43 11.6 KM Plot
CESC rs7182251 chr15:25453054 C/T 7.2E-6 299 21.27 23.6 18.07 KM Plot
CESC rs7196076 chr16:67887494 T/A 9.14E-6 295 21.2 26.27 17.43 KM Plot
CESC rs7217417 chr17:76173175 C/G 1.61E-6 299 21.4 21.47 4.27 KM Plot